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Eukaryotes, whose chromosomes each consist of a linear DNA molecule, employ a different type of packing strategy to fit their DNA inside the nucleus. At the most basic level, DNA is wrapped around proteins known as histones to form structures called nucleosomes. The DNA is wrapped tightly around the histone core. This nucleosome is linked to the next one by a short strand of DNA that is free of histones.

This fiber is further coiled into a thicker and more compact structure. At the metaphase stage of mitosis, when the chromosomes are lined up in the center of the cell, the chromosomes are at their most compacted. They are approximately nm in width, and are found in association with scaffold proteins. In interphase, the phase of the cell cycle between mitoses at which the chromosomes are decondensed, eukaryotic chromosomes have two distinct regions that can be distinguished by staining.

There is a tightly packaged region that stains darkly, and a less dense region. The darkly staining regions usually contain genes that are not active, and are found in the regions of the centromere and telomeres.

The lightly staining regions usually contain genes that are active, with DNA packaged around nucleosomes but not further compacted. Concept in Action. Watch this animation of DNA packaging. The DNA molecule is a polymer of nucleotides. Each nucleotide is composed of a nitrogenous base, a five-carbon sugar deoxyribose , and a phosphate group. There are four nitrogenous bases in DNA, two purines adenine and guanine and two pyrimidines cytosine and thymine.

A DNA molecule is composed of two strands. Each strand is composed of nucleotides bonded together covalently between the phosphate group of one and the deoxyribose sugar of the next. From this backbone extend the bases. The bases of one strand bond to the bases of the second strand with hydrogen bonds. Adenine always bonds with thymine, and cytosine always bonds with guanine. The bonding causes the two strands to spiral around each other in a shape called a double helix.

Ribonucleic acid RNA is a second nucleic acid found in cells. RNA is a single-stranded polymer of nucleotides. It also differs from DNA in that it contains the sugar ribose, rather than deoxyribose, and the nucleotide uracil rather than thymine.

Prokaryotes contain a single, double-stranded circular chromosome. Eukaryotes contain double-stranded linear DNA molecules packaged into chromosomes. The DNA helix is wrapped around proteins to form nucleosomes.

The protein coils are further coiled, and during mitosis and meiosis, the chromosomes become even more greatly coiled to facilitate their movement. Chromosomes have two distinct regions which can be distinguished by staining, reflecting different degrees of packaging and determined by whether the DNA in a region is being expressed euchromatin or not heterochromatin.

Skip to content Chapter 9: Introduction to Molecular Biology. Previous: Chapter 9: Introduction to Molecular Biology. Next: 9. Note that because the two polynucleotides that make up double-stranded DNA are "upside down" relative to each other, their sugar-phosphate ends are anti-parallel , or arranged in opposite orientations. This means that one strand's sugar-phosphate chain runs in the 5' to 3' direction, whereas the other's runs in the 3' to 5' direction Figure 4.

It's also critical to understand that the specific sequence of A, T, C, and G nucleotides within an organism's DNA is unique to that individual, and it is this sequence that controls not only the operations within a particular cell, but within the organism as a whole. Images like this one enabled the precise calculation of molecular distances within the double helix. Beyond the ladder-like structure described above, another key characteristic of double-stranded DNA is its unique three-dimensional shape.

The first photographic evidence of this shape was obtained in , when scientist Rosalind Franklin used a process called X-ray diffraction to capture images of DNA molecules Figure 5.

Although the black lines in these photos look relatively sparse, Dr. Franklin interpreted them as representing distances between the nucleotides that were arranged in a spiral shape called a helix.

Around the same time, researchers James Watson and Francis Crick were pursuing a definitive model for the stable structure of DNA inside cell nuclei. Watson and Crick ultimately used Franklin's images, along with their own evidence for the double-stranded nature of DNA, to argue that DNA actually takes the form of a double helix , a ladder-like structure that is twisted along its entire length Figure 6.

Franklin, Watson, and Crick all published articles describing their related findings in the same issue of Nature in Most cells are incredibly small. For instance, one human alone consists of approximately trillion cells. Yet, if all of the DNA within just one of these cells were arranged into a single straight piece, that DNA would be nearly two meters long! So, how can this much DNA be made to fit within a cell? The answer to this question lies in the process known as DNA packaging , which is the phenomenon of fitting DNA into dense compact forms Figure 7.

During DNA packaging, long pieces of double-stranded DNA are tightly looped, coiled, and folded so that they fit easily within the cell. Eukaryotes accomplish this feat by wrapping their DNA around special proteins called histones , thereby compacting it enough to fit inside the nucleus Figure 8. Together, eukaryotic DNA and the histone proteins that hold it together in a coiled form is called chromatin.

It is impossible for researchers to see double-stranded DNA with the naked eye — unless, that is, they have a large amount of it. Modern laboratory techniques allow scientists to extract DNA from tissue samples, thereby pooling together miniscule amounts of DNA from thousands of individual cells.

When this DNA is collected and purified, the result is a whitish, sticky substance that is somewhat translucent. To actually visualize the double-helical structure of DNA, researchers require special imaging technology, such as the X-ray diffraction used by Rosalind Franklin. However, it is possible to see chromosomes with a standard light microscope, as long as the chromosomes are in their most condensed form.

To see chromosomes in this way, scientists must first use a chemical process that attaches the chromosomes to a glass slide and stains or "paints" them. Staining makes the chromosomes easier to see under the microscope. In addition, the banding patterns that appear on individual chromosomes as a result of the staining process are unique to each pair of chromosomes, so they allow researchers to distinguish different chromosomes from one another. Then, after a scientist has visualized all of the chromosomes within a cell and captured images of them, he or she can arrange these images to make a composite picture called a karyotype Figure This page appears in the following eBook.

Aa Aa Aa. What components make up DNA? Figure 1: A single nucleotide contains a nitrogenous base red , a deoxyribose sugar molecule gray , and a phosphate group attached to the 5' side of the sugar indicated by light gray.

Opposite to the 5' side of the sugar molecule is the 3' side dark gray , which has a free hydroxyl group attached not shown. Figure 2: The four nitrogenous bases that compose DNA nucleotides are shown in bright colors: adenine A, green , thymine T, red , cytosine C, orange , and guanine G, blue. Although nucleotides derive their names from the nitrogenous bases they contain, they owe much of their structure and bonding capabilities to their deoxyribose molecule.

The central portion of this molecule contains five carbon atoms arranged in the shape of a ring, and each carbon in the ring is referred to by a number followed by the prime symbol '. Of these carbons, the 5' carbon atom is particularly notable, because it is the site at which the phosphate group is attached to the nucleotide. Appropriately, the area surrounding this carbon atom is known as the 5' end of the nucleotide. Opposite the 5' carbon, on the other side of the deoxyribose ring, is the 3' carbon, which is not attached to a phosphate group.

This portion of the nucleotide is typically referred to as the 3' end Figure 1. When nucleotides join together in a series, they form a structure known as a polynucleotide. At each point of juncture within a polynucleotide, the 5' end of one nucleotide attaches to the 3' end of the adjacent nucleotide through a connection called a phosphodiester bond Figure 3.

It is this alternating sugar-phosphate arrangement that forms the "backbone" of a DNA molecule. Figure 3: All polynucleotides contain an alternating sugar-phosphate backbone. This backbone is formed when the 3' end dark gray of one nucleotide attaches to the 5' phosphate end light gray of an adjacent nucleotide by way of a phosphodiester bond. How is the DNA strand organized? Figure 4: Double-stranded DNA consists of two polynucleotide chains whose nitrogenous bases are connected by hydrogen bonds.

Within this arrangement, each strand mirrors the other as a result of the anti-parallel orientation of the sugar-phosphate backbones, as well as the complementary nature of the A-T and C-G base pairing. Figure Detail. Figure 6: The double helix looks like a twisted ladder. How is DNA packaged inside cells? Figure 7: To better fit within the cell, long pieces of double-stranded DNA are tightly packed into structures called chromosomes.



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